Scaffold Ga0214921_10016191

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10016191
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8418
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002036	Metagenome / Metatranscriptome	600	Y
F002135	Metagenome / Metatranscriptome	590	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F028508	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001619111	F002135	N/A	MANTRKPIKRKKINRRVVRHTLEPLTKLDQWYIAKHEMFRAARKAGFSESVALYLMDSPESMPDWIVGDKGIIPTIPTPDEDDD
Ga0214921_1001619115	F028508	GGAG	MAKSTRPMVRIHNSETDEIIDREMNDSEFAQYQANKVEQENKQAEADAKEAAKLAILDRIGLTADELKTILG
Ga0214921_1001619117	F002036	N/A	YTLLSSVLLGKWTDVPSASTWAGYSATETWANAVNLGLGEIDTPGLYTMENRAASPDTIYNIAGLIANSAFGYLYEDNQGNIGYADGDHRQSYLLANGYTDLTANDALGSGLRTTTRSGDIRNDVYVNYGNNYGSQKTAISTASIALYGYKSESLNTTLHAAVDAQAVADRYIAQRAYPYPVFDSITFPMTSPELSNANRDALLGVFMGMPVNIQNLPVQISGGQFEGYVEGWRWSTGYKELFLTINVSPVSFSQVAMRWNTVPVGEAWNTLSAILTWENATIVA
Ga0214921_100161915	F002162	GGA	MPKYDYMCDGEGSLIVLDLPMDHKIPHCQVCGSQLKRVFTAVPAIFKGTGWAGKNG
Ga0214921_100161917	F002357	GGAGG	MAFNLEDYEDVATLNKWFIANYPMGRSDLFVISHDAEKGYILIQSTLWRDSKDASPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVEVNPTFKEKLEAKQNLYGKSGRSAAIETALRTSFEADKEPAPVAWSVGDVVDQIGSATPNEPLACEHGHILKNGVSKGGKPYYGYVCKAKQCEPKWGKLTANGKWYFEGVE