Scaffold Ga0214921_10016036

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10016036
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8474
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040085	Metagenome	162	Y
F046898	Metagenome / Metatranscriptome	150	Y
F066598	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001603610	F040085	AGGAG	MNLPDNPAIRHAYEQTVMCLLNAADCSHDEAEAFVDAMANLIFTTMQTYLSERDINAIDN
Ga0214921_1001603612	F046898	AGGAG	MMPTANLQAGRDMRDRQLDIFEETEHEFLERCRVVAVFTCMRKGQVSINDIRELIEVPPGLHPSVLGAVFRTKQFRKVGHTEATHPQAHARVVRVYSLATNKE
Ga0214921_100160365	F066598	GGA	MGFLIALVCMVLVFLLMLPIVGIMYFDTLSTQKESKAQIERMERLRKQLEEERKKLEQRGESK