Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10014730 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10014730 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9014
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (87.10%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9014

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (87.10%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001562	Metagenome / Metatranscriptome	670	Y
F005531	Metagenome / Metatranscriptome	397	Y
F008132	Metagenome / Metatranscriptome	338	Y
F013527	Metagenome / Metatranscriptome	270	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001473010	F000311	GGAG	MYFELTAPSQVAFARAIWDAEIIGLDPEEMGSLTFNIGTGSIEKVTRLCEKHNLSLIHESDSEQTGYRRN
Ga0214921_1001473011	F000980	N/A	MTKYQKYTWICTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTSCTLLSVEDATIPYTDSPLPTKEEKMEETTTPAVTVPDTYNSNLLVTYKVIKGYSDAEYATDKVASIEWDLHNGRQSQKQASMYASKIDAVKDIITEAYANSDDQDTLRDIAEALDIALTREVEWSATIEVSGTIQLDLLADSDTDVESEIYDNLYVESQNGNIEIADTEVTNVREN
Ga0214921_1001473022	F013527	AGG	MEHYEFNTFITVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNESVEV
Ga0214921_1001473027	F001562	AGGA	MSMTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFSIGVVEHEDYMQQCGMFDEDEM
Ga0214921_1001473029	F008132	GAGG	MTKWDTIQADVADQYVYLDEVEDVEQEDEQDFFGFAKSISLDHLTDEQLDEVFNMFGDK
Ga0214921_1001473030	F005531	AGAAG	MTITYSLWQGSSLLSVGNIAKNSDELLSVMAELNKLGKGFTYNIRGVEVK
Ga0214921_100147307	F036238	AGGCGG	MGDRANFAFKQTDTNTIVLYGHWAGHNMLANLAMAVDKARGRWADESYATRICISQLVGSEWNTETGWGMQVNSISDNEHKIPVINWGTQTFSLHEEAPHSFDSQIRGVNDEPIFTMSLDNFVKKYSPALV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10014730

Overview

Ecosystem & Geography

Associated Families

Sequences