NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10014282

Scaffold Ga0214921_10014282


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10014282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9220
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100142826F009669N/AMKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDNAEAYILGIAKLIAVVSSVIFALTVKDAAVTGGSVAQTNEAKDRTNGENIXINYN
Ga0214921_100142827F014229GGAGMNKLQLAAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQATSGNDRIEKAKMINNVAAIVEALTVGTTPTPAQLQKALNDYLPSEKTHWANYVSVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE
Ga0214921_100142828F091423GAGMPTGILTAILSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSEIENAVKDKDLEQARKHISS
Ga0214921_100142829F010817AGGALNKLASILALNFLFIGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLVEDSGVKPYKDSFGNELFLINSEHLVYFGVLNSWLKEKVPQDNILDKTIDKINN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.