Scaffold Ga0214921_10013878

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10013878
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9412
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011221	Metagenome / Metatranscriptome	293	Y
F029437	Metagenome / Metatranscriptome	188	Y
F067420	Metagenome / Metatranscriptome	125	N
F088289	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001387810	F011221	AGGAG	MLFYSNMAIDSIQDAKISFLKQTVQEDSLKKPLVDFVEAQRVFTKQIAKSASDVITLTAQTFANAITGITKKGV
Ga0214921_1001387812	F067420	GAG	MIILSLIPVRRRNWIIQASVFDDQILVFFHNPLTLAYFFKIFYNEECAYKFIEEVVKT
Ga0214921_1001387813	F088289	AGGA	MIKIVKLITGEELIADVTAGGITMTLSKPCALQMVPSRKDPDQPMMGMFPYAAYTKDHCIVVDIDKIVWDAAPVNELYNQYNSAFGSGIQLAGL
Ga0214921_1001387822	F029437	N/A	ERELKDMILWQLGKPEIWEQMVKERTRLFKERAEAERAEEERILAHKKKMADMFIFAMYFIAGAVILFAVIMGGVAIYGAAEEKRIYEQKVADRAAVIRRQQREREAAEKKEIDNYTKN