NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10013825

Scaffold Ga0214921_10013825


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10013825 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9437
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (93.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F004978Metagenome / Metatranscriptome416Y
F013757Metagenome / Metatranscriptome268Y
F019477Metagenome / Metatranscriptome229Y
F020008Metagenome / Metatranscriptome226Y
F072092Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001382514F072092GAGMTNWVQYEVWAEDDDGHQELVETTASKKEALSVAQRAFNEGLGIVTVHEETSDGSYETIKEFK
Ga0214921_100138252F000354GGAGMTKVNYDRFASFDINEACDHFDSTDQKAWKKIGKFIVADGQDYMTVLEEGFDYDREDIGDGEYQAFDAGVKYALTKMNIAFEAAGLDLQICEIDLVESMGFVMVRADDEPEDFVKRVLKKPVLMVDSWV
Ga0214921_1001382523F004978AGGAVKASTATKTAVLKLAGIDMITADTLEALTSYSPQFLTRAAMDAGYRGPEFSSCKFLGITNGGQFCYTAVFHVKGGTDSTKIFLTYNHAEDRVIADYHLTETF
Ga0214921_1001382528F020008AGGAMGVYANTVNAYAMSAARAKVYCMQNTLQSYGQTSWVLNVSTAKFRKDIETKKAKFIAKMEKDKIAQMQAEIARLQAKQTA
Ga0214921_1001382529F013757AGGAMLTNCIAKAKLVYNKKLQAYKLVVAFNAHKQFKKDKYGNEKVVYAFPTQAKCAYVSGDLLANNLQNELAAVLPIVYSTIRTNSVEFVD
Ga0214921_100138259F019477AGGAGMTGLFFIDIRMGRMFHLNGCDYVKQSTRTARMLSNGRIFYFGKTEYVHPAAW
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