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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10013748 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9474 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001459 | Metagenome / Metatranscriptome | 690 | Y |
| F003962 | Metagenome / Metatranscriptome | 459 | Y |
| F011208 | Metagenome | 293 | N |
| F014827 | Metagenome / Metatranscriptome | 259 | Y |
| F078389 | Metagenome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1001374811 | F014827 | N/A | VLRAILEIIAAVFRIIPGWKEKRTQNLENDWRKNREAIDRDLPGESWWLRNNDTSNKHDRGS |
| Ga0214921_1001374816 | F001459 | N/A | MRKLKAALAFMRDQEWVNEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLASQKLNSAIPGYGDGSDETIAD |
| Ga0214921_100137482 | F003962 | AGAAGG | LNQDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEAQWNGLTEQVKRLSGFFESHQKALQSLQDSIPDVWDQDEVDDLES |
| Ga0214921_100137483 | F011208 | AGGA | MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYAKVSKSQLERWQKWRTENGRPAIKR |
| Ga0214921_100137488 | F078389 | AGG | MDELGASPGAIELPTDKAKNGRPTQYDEKLGAKIIEAVRAGFTLERAAEYIGINPSTAQGWISKRQDFGRLIKKARREHEMGLLRSVELAGEKSWQARAWILERTHGYAQPSARLQVSQDVTHGISGNLASLLAGIAGRKKTQMIDAKAVEVKPAIPIRDNSYCATDATQTIVTTTPKVLRKPKHKRMRTRKPRAESLAKYTTTPPANPPAPI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |