Scaffold Ga0214921_10013348

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10013348
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9665
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004669	Metagenome	428	N
F011390	Metagenome	291	Y
F025741	Metagenome	200	N
F072322	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001334813	F072322	GAGG	MKTVDFVNATEFFDAMELGHGESDQFLNQFVYGGNHTSLTLVSRGTFLSLLKKYIIECEDIYEKDVVMEALRDHNLAVDVRIRYINIEA
Ga0214921_1001334821	F011390	AGGA	MKIQTTNYGLCTVEKKKYQNNGNLALILVDAEGQQVTNITTNVFPMGENEFCANYYNMGATLWKDIMASGFFKETGEKVPSGFCEFPVCVLVEN
Ga0214921_1001334823	F003750	N/A	GGVMTLDMVNRLFYIVVWGGGIVAFWQITKHMPKTLYTLLECISVMAMNVLCISPLSMLIEYILNGNIHTTMMFVAGLCFVGLSSAIWMVMVQSSRALQGKKQYQYVVL
Ga0214921_100133483	F004669	GGA	MHLWEIKNFQSSSVKSLFVGRTANGQDCIACAWNSSELYVFAYEGIVDTFLWALETFKSVGQAMAYAKLRNDFEDRRYSLPYHETMEQRTHNQLYMFQLEYLHIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSKLVNVLRNREVCA
Ga0214921_100133484	F025741	N/A	MENTTITQFVNDNVEGDPAFKGYVVCELKDLVKQNPTMSLSELLQDATESALEQWDTDQYADYYQE