Scaffold Ga0214921_10012922

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10012922
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9890
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028094	Metagenome / Metatranscriptome	192	N
F069711	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100129224	F069711	N/A	MKFTTQQRELIKDTRNKINKLKDEQTVLYSNLLSELNMSERAEDWIFDYVYNNYGTIKKIESFLK
Ga0214921_100129226	F028094	N/A	MQKEFDFRTPEEVAEHKKIAEENEKAFDLMFNSDEPVYNKYVDFLLDLIPFRLGWKARYWPNEIRWWAKCKYQKIRYGVSDDDVYCLGYNIALFILPRLKYFKKKGKTGISCCFLPDNFHLLEGEQQTAAEEKGVKEMNFAIDEMIFAFEYIIDGDKFCELPESLSFKAKGLNLNSEKTIEEKQAWGEYMEKANKLNERKENGLMLFAKYYDILWI