Scaffold Ga0214921_10012746

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10012746
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9988
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F040160	Metagenome	162	N
F058252	Metagenome	135	N
F095282	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001274610	F040160	N/A	MTTEKVKSLCAAITSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKAAGKYKEPTDSTIDPDLDEG
Ga0214921_1001274612	F095282	N/A	MASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRTITDTYCETDSCDSKPEVIQRPGTESYVFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDGAWYVPEHTLNNEAGYDLCALRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLD
Ga0214921_100127466	F058252	GGA	MTTNNTFESRIICEGTEVSESPTKILFGQRFNQCWVRKSDIRVKETLGFLDGEKMIRIVVPEDVANTLELEGILD
Ga0214921_100127467	F023326	N/A	MSRVFSSNKGVRRYGIQFGENMDDLGIELYCYSISRGEYGKNLCNKQNINLSDFKLLSPHEHFLNAVKLQWPTEVSIVNGKYTNTQLLRTLEELCNNQDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARVNLSANKDVTFIGIGNPSAGDNPHTRWAMPKGSSNFDSVSPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRRMQQMMLKQCYGDENAIDYVRNAIGWWPKSGFAQTIITADLIRNADTNEEPLWDSEGFTKVAGFDTAFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVGLCRSAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDSMGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSCYHAFKSRVLFGIDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLIYALEMARRNGLIFIGNDKPVPTNRFWARDEVSIDTTPDDDYGSDDNGDW
Ga0214921_100127468	F021128	AGG	MKLKNKNLAPVGGWYWKYEIKRDNLTFPAIVYGSTWNSLMQNIEKDYRSNGIELPINIEQMVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAAVTDKVLGTQLENKARGCSSCNKRRNALNSLS