Scaffold Ga0214921_10012617

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10012617
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10066
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (41.67%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F039497	Metagenome / Metatranscriptome	163	N
F044916	Metagenome / Metatranscriptome	153	Y
F048101	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F062446	Metagenome / Metatranscriptome	130	Y
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F066486	Metagenome / Metatranscriptome	126	Y
F082149	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001261712	F048123	GAG	MEQVMKPRYDFNKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNLKKLAKFKKKYGFSLTNKTNISKIAERMYNFRPF
Ga0214921_1001261713	F034827	N/A	MKYTITSQDKEALIEFDKIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLEDGKAYDFSNKKRNTINDPDEQQGNRVYKLNAKINIVVL
Ga0214921_1001261715	F030670	N/A	MKVVRYIKELEDEFGEPLDKWAVYEEIHKPNYPHAKFIDAKIVKTFVSPYHARNWMENDGKRTN
Ga0214921_100126172	F082149	AGG	MKLGLHIDWCIGRWFGRNNNLEIRVTLPTISLGYKKEDDNKWFGFKFNLRTDISFESYEYGKIFTLILFGFGVKLSKFNL
Ga0214921_1001261721	F036564	GGAG	MKLGRVTLDISYIVDMDNEDMVKHAIESFYEDLLQGVKYGNITDWIDVIEDKNATEDMIPEFLLEKEND
Ga0214921_1001261722	F064403	GGAG	MTNPRSKILSDLKRAYLKEHPVTLVDRILGYLNNLTDFQLCQLYAEKYETNPKYMAEQFEFNF
Ga0214921_1001261723	F044916	N/A	MGRKKIQKSRIEKGLEKEEKTFALMAKKIVDAIKDEKFLRDFTKDCLEELYKDNPKLFADHAKIKLNKK
Ga0214921_1001261729	F062446	GGAG	MIFNIKKIIAFIFIVLAWILMTFFFVGCANTSYHTIPDAMCEDSQNYSTKYNMMDSQDGSKNPNAQVNIFGVTY
Ga0214921_100126173	F039497	N/A	MNEEHNFNSEAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMQNAGKDEEDEN
Ga0214921_1001261733	F048101	AGGAG	MKKKIKMRKFKTIKDYLETCSEDEKEFIYDIYFDMSVDELVEIIFGNLQPDNVIQEIEEYREELEWDDNEAEKSNKLNRKCDCDFVGCQGC
Ga0214921_1001261735	F066486	N/A	MKNKTLSKNDPYYLKVGKFKKKNVFDTQVDMGDRMKDFFLGLGRRVITEDEFINIGFNYALIKGLDEIKSKKK
Ga0214921_100126178	F062447	N/A	MKHKIFWEKNSRVKGIVPQDQIIDKTSTDKFPCDAVTIRMYNLNSKNLTATAYFYGKEAKGTSWNGSNYTFAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVRETINKL
Ga0214921_100126179	F032536	GGA	MSQKQTFEELMRSFRFHKNPILNWVLGNNNYLYHTFLNTKWKVKNVLQKLTRGFSDSDCWNLPQSTAKFLLPRMKHLRQNYHSLANRHHLLLDDKIVPYVGQEANFEFNQALGCYNDKTTGLGISLNEKEYEYILNEIIFALQMIVDEENPEISLEEIYEVYPKGFDPIKDRQMFLTKQDSGDYLVEFERKENIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD