Scaffold Ga0214921_10012519

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10012519
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10119
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012775	Metagenome	277	Y
F021538	Metagenome	218	Y
F027851	Metagenome / Metatranscriptome	193	Y
F038678	Metagenome	165	Y
F105158	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100125191	F105158	GGAGG	VEKLPKNQKEYYHNRIREFEKRTGKCMNVKGVSKFYDYNIENAIYNTPAALEMMEKHKCYIYYDALVEEDPRSNGTHWAKYGFAYVNGKTYKYYYETKSWGQEIKNIDATQCKDIKWKAAKLDIYNFPYLDPGEDYLPYAIENKHIGSNFD
Ga0214921_1001251911	F038678	AGG	MGDLMKLNFEKIGFYIMLVLVSGSIGYALKPAEQVDQKELERKYQNQQQVCTAAIHMMADFSKKGYYQPKTKKEWAIERMMSR
Ga0214921_100125192	F021538	N/A	MCHSLHVRPDVESKTVDISLWNYGFNDGKLHWKKRLQILIDGFAYSDLVVLDKEELDKLISTLEEARGKIA
Ga0214921_100125195	F012775	GGAG	VKLFSQTTRALISLGLKTRSRKWPEDYYIYRQEDRLMDSMGNEFYFSWEEFIRLHQEILNNAGPIWEIYEEVEFNNL
Ga0214921_100125199	F027851	AGGA	MFKVSSILSNILKKTAGIPEVNLNKLPFANKIVGDWEENSMKDLVKQLPKETIQRLIKVCNEELARR