Scaffold Ga0214921_10012253

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10012253
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10282
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (84.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F020690	Metagenome / Metatranscriptome	222	N
F048314	Metagenome / Metatranscriptome	148	Y
F052598	Metagenome	142	N
F054041	Metagenome / Metatranscriptome	140	Y
F058151	Metagenome / Metatranscriptome	135	Y
F074407	Metagenome / Metatranscriptome	119	Y
F099316	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001225311	F015732	AGGA	MAKVTNLETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSANNVDEVMAKVSPQYKKVSESVQGTTATKKAQKLKEIDAFLANATSAKGNPFAALGA
Ga0214921_1001225321	F054041	AGGA	MSVIFTCGHKAKDDEDGWTISTKAYTRENNRAIDYRTVCNNCYHVYEMEDLILYGEADVEKWLEGE
Ga0214921_1001225323	F052598	GAG	MIPKFKMTVTDEFNCDFVYVTEDKEDLLDRVALWLAQLDNTPIYNLNIEVN
Ga0214921_1001225324	F058151	GGAG	MWRKREIMELQDKTSISTLVDNVPTDVSGKWVKKEELYAFASAVANHVLSEVENKLNDSK
Ga0214921_1001225325	F099316	AGGA	MWRIRKIGDENGYIVRNKEIAVQLLDQFNRKDGVWEMVEITEYELGDPMEQ
Ga0214921_1001225328	F074407	N/A	MNKKIKDLAIEAGLYVDFNGEPWPKNMTGEDVEVAYEKFAILLIEECAKKVDKVRRQGGWYYGEIIRKDFGLYDRN
Ga0214921_100122533	F020690	GAGG	MTNEIKSTDKLVSKGIYMSASAIYTHTKSAKIIALMIKRSLPEFRKQLDLPRDVQFRVAPIKAKNTNGYYMVESKTAVIDCRLGWAKALEVIAHELVHAEQYHIGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCSILEEKYP
Ga0214921_100122539	F048314	AGG	MKDSIEQAAAMLSLGYTEHEIIRIMHIPPSMAEDLIQKAEQWNDQEFVPYTEEVVDEMADYYGEE