 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10012223 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10305 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011208 | Metagenome | 293 | N |
| F014827 | Metagenome / Metatranscriptome | 259 | Y |
| F019450 | Metagenome / Metatranscriptome | 229 | Y |
| F024501 | Metagenome | 205 | Y |
| F036596 | Metagenome / Metatranscriptome | 169 | Y |
| F078389 | Metagenome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1001222311 | F019450 | GAGG | MTSYAVYNSVGQFQARFLTWRSALRWAIREGMEWTAVIRKEIQS |
| Ga0214921_1001222314 | F024501 | AGGAG | MTHPKQLDEVGITESYLRKLAKKEGVSYKKAVQIAMEQWGEYSLKLINKIVAENIKTR |
| Ga0214921_1001222315 | F011208 | AGGAG | MTEEEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWQKWRTENGRPATKR |
| Ga0214921_100122232 | F014827 | N/A | VLRAILEIIAAVFRIIPGWKEKRTQNLETDWRKNRKAIERDLRSESWWLRNNDTSDAHNRDS |
| Ga0214921_100122235 | F078389 | AGGA | MDENGASPGAIELPIDKAKNGRPTQYDEKLGAKIIDAVRAGFTLERAAEYIGINPGTAQGWVTKRQEFGRLIKKARREHEMGLLRSVELAGEKSWQARAWILERTHGYAQPSARLNVTQDVTHGISGNLAQLLAGIAGRKKTQVIDAKAVEVKPVLPIRDNSYCATDATQTIVTTTPKVLGKTRHRRMKTRKPRAESLARYTTTPPANPPAPI |
| Ga0214921_100122238 | F036596 | N/A | MMQTNKTKTWKIGEECVGGIIQAKISKSSYFPSCTTIKILIKDYKTQEIVDSQIFGRLHESRLEVYLNDMTSSYHASKVVEWVKKNAWYDNATMAFVGKS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |