Scaffold Ga0214921_10011457

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10011457
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10777
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016966	Metagenome / Metatranscriptome	243	Y
F040100	Metagenome / Metatranscriptome	162	N
F041760	Metagenome / Metatranscriptome	159	Y
F088891	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001145711	F040100	N/A	MNTDLTQLFKTITESVPNYLMFITLIVMCYSMGVAFVKIVCDNVVKVVLASRVPVTFKIKDGEITETT
Ga0214921_1001145716	F016966	N/A	MKKVTFKRVQNQSLPNLYSGTINGEIVGFIYKPTDSKTDKNAWRSYVGIGDKARFLYHTWDMNDAMEAVQLAVK
Ga0214921_100114574	F088891	N/A	MKILLTLTILLVGCNRSEPVAVDTAKVTQTFVDKKIRFVKVDNCEYIVTSFQPLLITHKGNCTNHK
Ga0214921_100114578	F041760	N/A	VLAVRYPSSVDRVRQSFDHLRQVFDVPDVSKIKDMFGSLLFNDSDLYRYNYCLVRFDDKLFVIEPVDLAKCTYARKAVVYHPLQHMI