NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10010528

Scaffold Ga0214921_10010528


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10010528 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11422
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F004669Metagenome428N
F006220Metagenome378Y
F007310Metagenome353Y
F009750Metagenome313Y
F010398Metagenome304Y
F011390Metagenome291Y
F013084Metagenome274Y
F018927Metagenome232Y
F033432Metagenome177Y
F033793Metagenome / Metatranscriptome176N
F039133Metagenome164N
F040618Metagenome161N
F043399Metagenome156N
F048994Metagenome147N
F081334Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001052810F011390AGGAMEIKTTNYGVCKVKKHKYQTNGNLALSLIDEAGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVASGLFEQTGEKVPSGYCEYPVCKLVKELA
Ga0214921_1001052813F039133AGGMNTTDKVIVRFKSRVPKMLYTAHYNGLLLASGHDPIDLGEYYASKYATEWILQDGNNFYTQRGVNK
Ga0214921_1001052815F033432N/AMSNYRIKFLSLWSSIMAEERWHPIDSIDCIPTCKGWNAWAPLCECGSNYCTFKPSGTLEDMKLVIEVRPLAK
Ga0214921_100105282F004669GGAMHLWEIKNFQSSSVKSLFVGRTANGQDCIACAWNASELYVFAYEGIVDTFLWALESFQSVGQAMAYARLGNGKEDRSYSLPYHVTMEQRTHNQLYRFQLQYLHIFEGTLQIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA
Ga0214921_1001052821F004583AGGAGMKNVRNSDRLREILISTRHQIVSLKDIQIDLLRTNPKASTEIATQISALEEVYKHQLSLVEMTESTEPKPRGWFSGQIKSKEDRLANIMD
Ga0214921_1001052823F048994AGGAGMIGLVKVEFGFMNLYVNGVCVVSTSTIAGIRHAVKRYNLQGYLMGAE
Ga0214921_1001052825F006220GAGGMKKFKKFVEELAIASGTEMMRASQMRPTSFKDKSKYTRKTKHKKGSNNE
Ga0214921_1001052826F007310N/AMRAVYWNKTERWNNHHHYELLIEDITGFDLKQSLCEQSVKYMAKRLKDTPYHRTFKSKYSIYSDEYNALVEKFNYQADNNGKIEVA
Ga0214921_1001052827F013084N/AMGIMSILGLMEETKNTVLHRGHNVKNWLVLGNDCYALECSDCKKTLMIKENPLPNEIKVSGEALAVNCVKPVKEKKLRKK
Ga0214921_1001052828F018927AGGMNKHIEITRHLTVDGTTTYYVVEKSKNSSSIIWNGTSKQAAYQVAYRNARKENTPLYDTVYKAEFDRNGVKHIIPVGNELLDVNN
Ga0214921_1001052829F043399GAGMEGRKSLQACPMFYDNFPIVIWTIVKKNSNYILLDSCGIEVFRRKENRKQEIYQYLENNGIDYQEEF
Ga0214921_1001052830F010398AGGAGMEISIQGITKVNYELVIDEDVFNDACEECGLDPANYKKFTKDDWDILNPHLVQAVVDNESDIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSVEIM
Ga0214921_1001052831F040618GGAMTVNIKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDVFAPEENYFDSVNSFGNEIWHLNPDNGEMCGKTYLYSSMTDRLYVPYGISQPKEKSPSFLFVIE
Ga0214921_1001052832F009750N/AMKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTVFTVNIPRNIGDDIWLRFKTEFEGNYSYNSF
Ga0214921_100105286F033793N/AMSKVYRMILGQDPFSTRPIGIKKSLKEAKAYILTKAYNNDYCAIYVADNENPAGELVGRWIIKNKKFTSYEKKPKAVDYKKQIF
Ga0214921_100105287F081334GGAGMEILIKENAANNYMRRCYKGTRPDAVGLHNEGFYNILKGLEGKWVEVDTTHLFANQFNTVVIEGVTGSGARIDMADVAEIKDDVRHGVYKCVWCYGYDHNKDGLCDRCEQSKYLSPLLPSIAK

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