Scaffold Ga0214921_10010278

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10010278
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11611
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010619	Metagenome / Metatranscriptome	301	Y
F011151	Metagenome / Metatranscriptome	294	Y
F014135	Metagenome / Metatranscriptome	265	Y
F019602	Metagenome / Metatranscriptome	228	N
F022413	Metagenome / Metatranscriptome	214	N
F030988	Metagenome	183	Y
F043225	Metagenome / Metatranscriptome	156	Y
F085161	Metagenome / Metatranscriptome	111	N
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001027810	F019602	GGA	MDDRAVIERYILQAWDFGLTGTEVVTYVQYMSSIPSFEIETVLQDLIARMSE
Ga0214921_1001027811	F100405	AGGA	MTKSVQQYTKIFEVLQAATAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPVKVKAVKTAKAPVVKAAPVKAKKVTPVTMPAGDSLEGIMNAMAKSSAKKPVNLLDEIDTDVEDFEDRAFAEAYIRT
Ga0214921_1001027813	F043225	AGGA	MNIDLINVELQTVALTQQEEEIDLTYQAFRDTMNAYYDTMTYESDSYDEDCIFYGVN
Ga0214921_1001027814	F014135	GAGG	MSNGLTIDFDTADRITLLVLQDQLKYLQKDIEDFKEGKWLHPEDVTNHIKIIAALELLIPYYGGTV
Ga0214921_1001027817	F022413	AGGA	MLLAKPKLTNTLDSKQFETFAECQEYLETYTDISMPLVEWIALGKILVAETMTTPEFYPKKVKGQIVMTKFDIEEFA
Ga0214921_1001027818	F011151	GGAG	MTGFKSKRQMAQDRFKVYCEWCHDWHYTDEVDILNVEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE
Ga0214921_1001027822	F085161	GAG	MEVYIVKSFSPENGWVNLKAFDNNDAAVYFANTIEKQIPDGVEDEFVEIEVLNVRSWN
Ga0214921_1001027826	F030988	GGAG	MKHWGELNDLETAIIRVGEFKNLFKLLVAGTENYVDIKVLQSAIYTMETMIDDIDSTLYEKFETVFDAVRDEEDMESEEEEYRFENGQPFVKTKTTFVNNDNSMDTMFNNITINGSVNQGTTCTVTSTEEDEAFKDLEKAIKNWHKQTP
Ga0214921_100102787	F010619	GGAG	MTDPMDFENSHPDMEKIIQAEGLLPITKSVAKMLMKHQYLSLGKFFTKISDENLQILSEIIEEGDSEFNDGMEDIVLMTEMLSRAEGVPSESIEDITENVNYFGACVTCVSLARKGLVRVFYENMSFGKELGEQTLVEKL