Scaffold Ga0214921_10010262

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10010262
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11625
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001713	Metagenome	648	Y
F001799	Metagenome / Metatranscriptome	632	Y
F056607	Metagenome	137	Y
F059761	Metagenome	133	Y
F102704	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001026216	F056607	GAGG	MATAPVYYSDQTVKDYIANQFSGLSGDELYKAVANEAASKGVSAEQIGRVLGFDTGAVNQYATNVGKPLAAEKEVLNNVIDYAYNTQYGRDATAAEKANAAKYLTTGGNSGTGTGVLNYSTEGYNYDTQSIISGYRSALGRNPTQTEYVSAMANLGYNPYDATVLGAAGKLSANVAALESDPFAGRYANENPYGVYDPTTQTYKLDGTVPNISKNVTGNSVQFISPVTQQPIVTSFVDGKLVVKEGVNTLTGEQAQAAINLALGTGALTGTEYKNLTGALANAKSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLEQAQANSTGIQALVDKLAAENGGRLPANFSVGALAKANNIPFQFGQEVYDKAYMTDSGKKIDTLAKAPTSQFNFNPANIYQQPTVAGQFRELFPSFGESKRLAQGLINERPTTQSIVNMIQGQPVNTANLMGNLAPTQTVMPNAMPTGLQTGMPIGLPMGTSVGGQPSLSNILSMISK
Ga0214921_1001026217	F102704	GAG	MNYQELVGLVGGRNPQDVSYQDIVSGIQSQYRPQTKFGRTTSLLDMIGSQLPDQPRIAYGSLLQPSGLPPSINLGATVKNPDAAASVDSGVINLGNLDTGKITGNTAIDNTLVYNNDFTKNTGGVNLDTSGVSNGLFGTKVTGTDIANVASTVAPIAALAGNSDLVKTAIALNLIGSAADIRTEQDILNLGTKIAMLAAGPAGNALAAGLGIASDNTPLTVNALLGLTNPTLSLVNSIAGNLTGYSLGDIVNGLLNTPEGTVGEYGLLGAANLAKTNDASRKRAGEAYDSLAINDLRVLAELGDTEARDKLLSMVSGGSSTYNPISELGTARGNSYFNLFTPIAGSGGGGKVDYWTSRAINAE
Ga0214921_1001026218	F001799	AGTAGG	MQNDKAILAQWAKNLLNDDFFKEVLNNLKNEQISVIINTSAEECDRREDAYRHIKSIELITGHLEGLASETVIREKKWKIL
Ga0214921_100102623	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMSCERDEEGTYNENIDEVWFEGRNVMGIFTDAQFKELEIEGCMRLSKHILEEADEAKIAAYE
Ga0214921_100102624	F059761	AGG	MTELNLFERAMGWRKRQMVTSQVGRNEIIEKIRNDTLEEIAQEFDKMKSFGDTSQSFATFVRNKKVCPPCHGNCNQGRTCPAR