Scaffold Ga0214921_10010096

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10010096
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11755
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F021988	Metagenome / Metatranscriptome	216	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001009621	F006846	N/A	MLYELVEKYIMRPKRLRDAIEAVVHDNDELLRILKEHEHEEPTNLTWSEGNTWYGWTYNPVKKRYYFDDIGNESLMGLWEDQWLREADTH
Ga0214921_1001009626	F031497	GGAGG	MKTPESKVAESLVNLMDDHWFNPTMFGRYLAEQPMYTLDRIMEMVVSIISEQAKIYDVYLNRGTSSEGLLLANELNECIKAYQEDNSLINLKLPSRSYKVGTVPKEPKVNIFGWKEETDPFS
Ga0214921_1001009627	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEAEAKGIKFTAETPSNKAK
Ga0214921_100100967	F001280	GAG	MCYECGCETTGSTLGATPVAISDVSRDGESGLTLGMVSTPEQTRQFINE
Ga0214921_100100968	F021988	N/A	MSNGFKKEDGTGTVPPANAGAPAGAVTSTTTPKKYPRQGVKIDTNKHGIRRETSLIPRPPKKSGRKKV