Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10009535 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12258 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F032573 | Metagenome | 179 | Y |
F039032 | Metagenome / Metatranscriptome | 164 | N |
F057197 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214921_1000953511 | F057197 | GAGG | MANFETWQYQNLVQFAKEATERMNLLNAEVEALNADLKAAINAYRDLLRRDSFGFLKATHPAETEKTGE |
Ga0214921_1000953517 | F039032 | N/A | MMVTLSEVDHKIDAHVDVCAIRYEGIEKEMRGVNARIKRLEQILVTGCGSIILLLLTILTRGH |
Ga0214921_100095358 | F032573 | AGG | MSKAEAWRKWWSVIHKTAPAGSYDPREAPMWDAWEAAWDAANKQSQVEINHLKEQLLRANTNDGAYKAAFLAGQMAARGGSWK |
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