Scaffold Ga0214921_10009223

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10009223
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12541
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F007467	Metagenome / Metatranscriptome	350	Y
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000922314	F002009	N/A	MEEMTPPTIQEMGNAAQEIVWRVMGKGSEKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNDETSVDHLERALVRTLFVLAQIKKEVPRL
Ga0214921_1000922315	F041081	GAGG	MMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCYAKVVNNVIMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0214921_1000922316	F003304	N/A	MKQALVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGVIEPQFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR
Ga0214921_100092234	F025460	AGGAG	MAVIDIPELVNMFRQGDIDKQAAAEAQRRQALEERAMAIKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTIRNEQDLQNQDIETQRAELSDRLKELQKKRVKQEIEIAKGDTRTFAMEAGLGLVGAKPRADVLKDIEAEAGVYKNKLAELGFNRQAGQMETNIPDYQSPTMPLQAPTQVVPETPAQTPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ
Ga0214921_100092237	F030376	N/A	MAMLVASGMADEDDTDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND
Ga0214921_100092239	F007467	N/A	VNDKEAWDQFEDGLQDAKSYDEAIAWVKANQEIVEKLTLRAMINKFNRDISNANKTWRN