Scaffold Ga0214921_10009203

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10009203
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12559
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F013087	Metagenome	274	Y
F081344	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000920316	F013087	GGA	MSNVWVYFSKTGTGYELKGSDVISGFDAFINTDGTYLIEHSYSDLKNDMHFFIYEWDKSQKKRRTIFEGYQRENILVNFAKNVHVCHNVRQAIYKEYLMDNEELELEKNAIS
Ga0214921_1000920317	F001561	N/A	MQSREQKLVYLKKTIETLWHGVSDTKEGGYPRIISLYKEVLMYDYHDADSWENMIWLMWSMAINKKDTVWLFEAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRCKDVPLSTHHSLISVCEKSGDKVKAIGYCKMTLARFPNDPYTKSKLKSLNQL
Ga0214921_1000920325	F081344	GGAG	MTLDMVNRLLYVVVCAGGIVAFFGHMRFYTITGLKVLKNILTILAYATPLTLVYGLFEWIITGDGKVAYWLFQYGVGACIVGLFYYFMCCMLSKADDREKERAI