Scaffold Ga0214921_10008802

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10008802
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12949
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044903	Metagenome / Metatranscriptome	153	N
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000880210	F060719	N/A	MQPQHLKINIQDEISADQLRLKYNKQMSERARYDAENSVSKSTGQAFQKYYIETKVYYTTANIGSDCNEITFINGGTTALVVADIPLQPNQSLRISGNRGEIDTTQYQLSFTTPVNTGNLLFVLRKLYI
Ga0214921_1000880219	F085397	N/A	MSQRNKDLPAMPVHPMQDKFGQVILMAGMSKLEITALNILTAQLRINYVEDLSPEDITFVIGQSYEIAEEFCAFIETKSEKESSSIII
Ga0214921_1000880223	F075869	N/A	MKNWILIGLAGLTGLYFLGRGQLARRTKLIFKRIRFANKRFELIFGVQNPTGQTANVSAITGEVYLGNKLLANFSSFGEQRIAPKSESELKIQASPTIGILQLITSKNWLKKGLAYTIKGTGNFDGIVVPFEYKASLI
Ga0214921_100088024	F044903	N/A	MARRKKRSAPSRRRKSRKMGAIGKSFFMDALGLVAGAAAARVLTSSGKILPNIDPKIKSAGVIAIGAFFPKLVKGSIGQSIGSGMVAAGGLGLLQSTGVLGQIDNAMEIPVSVMAGDDLSVMAGYSPDNLSVIAGMEEEYC