Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10008475 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10008475 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13315
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (36.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13315

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (36.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014486	Metagenome / Metatranscriptome	262	Y
F020649	Metagenome / Metatranscriptome	222	Y
F024058	Metagenome / Metatranscriptome	207	N
F032162	Metagenome / Metatranscriptome	180	N
F034466	Metagenome / Metatranscriptome	174	Y
F043789	Metagenome / Metatranscriptome	155	Y
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000847514	F043789	N/A	MKKKLSKYEQLLANLNKAAQDLKVASTQAVAILEAHAEKIESIHQDAMQK
Ga0214921_1000847515	F032162	AGG	MKQNLKISYQTFGENNAYLLEGNIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMKALTKVALHSLVNKINAKGRKGGLLDLAKAKAHSIIDEMTQTCFLWGATSSEGYSLGTISAEKPSDYCGAISNGRD
Ga0214921_1000847517	F056412	N/A	MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYEHKVEVAHHNSMMVNEKQIEEII
Ga0214921_1000847518	F024058	N/A	MTHRMINWNFQRKQMRENMRKNMTASEEVIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANSAVVTFLEGEDKDKVGTINLNNAKLVKENK
Ga0214921_100084752	F034466	GGA	MRNLLLDNYEKSLPSKRDTEDFIANFHQYRAKKKAQQKTHYGLLFACILVLTMIGSIVAKQTKNNLDIQTAAGQVQK
Ga0214921_1000847524	F014486	GGA	MKIEKLLNENLESFYPWSDSDNPPLDTNKSFVEKQREIDEVFEGWRASM
Ga0214921_100084755	F020649	N/A	MVIKIKNWWINLKTYDKFFFITFIPAMLFTFWGLSDLYINYFDLLSREDHLQFFLRVFFPVSLATFITVLEHNKRKKLIKDIKTYLND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10008475

Overview

Ecosystem & Geography

Associated Families

Sequences