Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10007993 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10007993 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13889
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13889

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (85.19%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019308	Metagenome	230	N
F024770	Metagenome / Metatranscriptome	204	Y
F025725	Metagenome / Metatranscriptome	200	Y
F036203	Metagenome	170	Y
F041730	Metagenome	159	Y
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000799320	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAASYVSVDAYQALLTRYNTSNSIRVLVVDADVKATDAATYATDASKAASALANYNINQLMMMG
Ga0214921_1000799321	F024770	AGGAG	MAVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPSGGADVYLGGEGVTTTSYGYLLKADTNFSIELQDDEKLYAVVTTSTQTVNIIRQGT
Ga0214921_1000799323	F053995	AGGA	MPQVNRISRGEVSVGAIQGSTGDMVYGLDFGTASVDPASITATTRGSVTFTLTGAKTTDIIIVNPPADLNDDLIFCGAAVSAADTVSIYLYNPTASAINDTARTFSYVWIDMTA
Ga0214921_1000799327	F025725	N/A	DDTMQVLKSMGISSYRVSTPPGYAGIQVNLPNDSQAFFVWTKIDQTDFHFRLARFWAEENPFSMWVSPNLIEALTKTRVLANQ
Ga0214921_100079936	F036203	GAG	MAEMQQPMSSSDAGNVTGSSSKVQRARGVSDAQGVNPKINQDDFFRDLDSLVGFDRQQTGCSIGRLVAKLDEPLRSKLNEIMRNEKVNSARLGEVMLAYGLQVSSSDVLRRHRRRLLGKDGCKCPNES
Ga0214921_100079938	F019308	N/A	MAKSSFTLDLFGDKELVNALKAGEEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIKKGHRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10007993

Overview

Ecosystem & Geography

Associated Families

Sequences