Scaffold Ga0214921_10007899

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007899
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14011
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F009749	Metagenome / Metatranscriptome	313	Y
F011754	Metagenome / Metatranscriptome	287	Y
F012023	Metagenome / Metatranscriptome	284	Y
F012868	Metagenome / Metatranscriptome	276	Y
F023522	Metagenome	209	Y
F024537	Metagenome / Metatranscriptome	205	Y
F042301	Metagenome / Metatranscriptome	158	Y
F064668	Metagenome / Metatranscriptome	128	N
F100345	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000789910	F001008	GGAG	MSQSKHKKYQWIDGETADRITSLNLKDYRAYLKKELAQWKKNPKTEDNPDGYWLHPEDVSGNIRRIEALNLIINDFITTSDEIK
Ga0214921_1000789912	F009749	AGGA	MNYSWILIVAMYSPAGDFMNKDIIKFDSQKACEAVRVQLPNLDHPMRVKHKGLCVTRDHWEGKKQMPGVAYD
Ga0214921_1000789915	F023522	GAGG	VIDPNPTPTILRAQRAEEHLKVDQRLMQLLDTYHAIVLKDDDFSEKLTWCLENCQSKFRDLSDPNGRAWYFQNEQDATMFAMKWA
Ga0214921_1000789917	F024537	AGG	MKDLEKQILDELGTKMQSEIDREILWGMLKNIGWRRVMLDRFTDNNHAVDITNWLAEHCKHAFERRGADFIFESEVDAVNFTLRWQ
Ga0214921_1000789925	F100345	GGAG	MTDSDRLITLLKGPDWYAHKAAKEMLMILNQGKRKRYKSMNSTADKHLSTIMDLFDKEQSVRILKTWLTTYSLPLDPDRLKTFDRFHEQFGKFITNNTELIKSY
Ga0214921_1000789926	F064668	AGTAG	MNITVYSRNRFYETFTKWDVPRDFADPMANYLVYGYEPGGFFTSLLANDFFAAIQSSHPANTVEALKCLVGWINDCMPPEAYSSYNRVSEWCRLPEGHRRAILEKYELIYTEQEEIMLTLRSESTVEPVLY
Ga0214921_100078993	F012023	AGGA	MEKIDYAKLNERIVEQAYEAVLTKEQLQKLIQDKFERARQYHEALAKAPTFSVN
Ga0214921_1000789930	F012868	GAGG	MRHFDYDWDLEPWGIVFDPELDIDKLGWNAGDCFKIKNVDGRAMLVKLDPVVKFIEEGLR
Ga0214921_100078998	F042301	AGGAG	MVTEGSKWTGVTGNDKFHVIHVVELDGHTWVHYIKENAPEDTTREFSCYLESFLSRFRAIPE
Ga0214921_100078999	F011754	GGA	MKIGFSLGRCVRDIVKGSVDIDDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDESKCQAVALELWSTNKILQPRRQGLHRHRQPENSVWVDMFPTELSENHSVKSAWDAYRFMLHMVENVDNEAVEVFKQ