NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007674

Scaffold Ga0214921_10007674


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007674 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14275
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048777Metagenome147Y
F073550Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000767410F073550N/AMSGVPQLPANTLFDVRLKKDQARQRAYNQILEQALQKVAHSATAPNQPTFVYFNVPPFVLGLPGLDLKDCIIYIVYQLRSQGYEVRYTYPNLLWISWSHHERQYLMEKNPIVQSMMPPKMAGPEKRRGASQISLQQAATSSPNAGPALRAADYTPPAGFVETMERPSPYAKPKQSVRFSDSPDTLGNVLDELWKI
Ga0214921_1000767415F048777AGAAGMEGLPKWLNIKVVSAIGLFFLLIIIASAFIKGSNHLGMQGFEGIREPNVVLDTSKRTMFPYTTEPINSLDQYELEAVFENEGDRQLKKQQINKLTRQYPLDWTNYPPNSSKFQSEQAKYIEGFSSDSSAEDLNKPYKDIGDGNLIPPDNAAIEREEREILATYEPRKCGDMKSYDVYDAQKLLEQIYKPKGLVPSVNKHDENVFEVVNTRSLKDKIEYEDDLPDAPSTGGTGLGPGEAAIEVPPTALEVAAGRDPFYEPTTSTRSSRTDYMRWTPGLERMFAPTYSITDWVGQPDAE
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Institute for Fundamental Biomedical Research
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