NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007555

Scaffold Ga0214921_10007555


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007555 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14443
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (26.83%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010317Metagenome / Metatranscriptome305Y
F026559Metagenome / Metatranscriptome197N
F027823Metagenome / Metatranscriptome193Y
F038204Metagenome / Metatranscriptome166N
F038644Metagenome / Metatranscriptome165Y
F041755Metagenome / Metatranscriptome159Y
F090286Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000755510F010317AGAAGGMKKIYIEKLAEVSGGLPARSMEEHIMGKPNDNYSSIPIEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSTVTEVGDKYFKTRNSLYLYKFL
Ga0214921_1000755511F038644N/AMRTIKITQLPNGPWREYALEAQRRGIELVSDCSLSGTDITLIGAIDMIRELTEKIEKKTE
Ga0214921_1000755512F027823N/AMNITAAKDVPCVSQTNLWKGCFESHFMSGREIDAKYPILNTKWKYSHHKLLAGYDGYYYAYEKDIGTGIMFDPWLREFKVNMPIADDVYKSKMYYTTVESNLILLVLYKKKD
Ga0214921_1000755513F041755N/AMNITATKISGEEIHKKYPITNTKWKYSNRGYDWNGNNGYYYSNYKDWSTEIVTDPWRRNLINNGNPIKTNEERSMFSTTVEGNKVILVIYLNTYV
Ga0214921_1000755522F038204N/AMNKDIEFNGDDLVKSVESFASTLPTKIEYFEVGICDWGIILRREIDTNGKNYISHTDDSVTFTDSFTDIYDETQHHDVTHTRKFNVIRDELIASHKKKIEELQKEVDILEASDTFDKYNDIVYNK
Ga0214921_1000755523F026559N/AMTLFTTSNMKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDTCQVKKG
Ga0214921_1000755534F090286N/AMNILNIFKKKPSEPEASKIETLLPEQHYVKISLEVEYLLGKQLYIYNTNYTIKAENEQLFNESKEKQVKILNAIIKDIHEKLDDKSSDYVCVGEAMLLKKSDFINARIVYNYKKDK

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