Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10007555 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10007555 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14443
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (26.83%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14443

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (26.83%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010317	Metagenome / Metatranscriptome	305	Y
F026559	Metagenome / Metatranscriptome	197	N
F027823	Metagenome / Metatranscriptome	193	Y
F038204	Metagenome / Metatranscriptome	166	N
F038644	Metagenome / Metatranscriptome	165	Y
F041755	Metagenome / Metatranscriptome	159	Y
F090286	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000755510	F010317	AGAAGG	MKKIYIEKLAEVSGGLPARSMEEHIMGKPNDNYSSIPIEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSTVTEVGDKYFKTRNSLYLYKFL
Ga0214921_1000755511	F038644	N/A	MRTIKITQLPNGPWREYALEAQRRGIELVSDCSLSGTDITLIGAIDMIRELTEKIEKKTE
Ga0214921_1000755512	F027823	N/A	MNITAAKDVPCVSQTNLWKGCFESHFMSGREIDAKYPILNTKWKYSHHKLLAGYDGYYYAYEKDIGTGIMFDPWLREFKVNMPIADDVYKSKMYYTTVESNLILLVLYKKKD
Ga0214921_1000755513	F041755	N/A	MNITATKISGEEIHKKYPITNTKWKYSNRGYDWNGNNGYYYSNYKDWSTEIVTDPWRRNLINNGNPIKTNEERSMFSTTVEGNKVILVIYLNTYV
Ga0214921_1000755522	F038204	N/A	MNKDIEFNGDDLVKSVESFASTLPTKIEYFEVGICDWGIILRREIDTNGKNYISHTDDSVTFTDSFTDIYDETQHHDVTHTRKFNVIRDELIASHKKKIEELQKEVDILEASDTFDKYNDIVYNK
Ga0214921_1000755523	F026559	N/A	MTLFTTSNMKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDTCQVKKG
Ga0214921_1000755534	F090286	N/A	MNILNIFKKKPSEPEASKIETLLPEQHYVKISLEVEYLLGKQLYIYNTNYTIKAENEQLFNESKEKQVKILNAIIKDIHEKLDDKSSDYVCVGEAMLLKKSDFINARIVYNYKKDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10007555

Overview

Ecosystem & Geography

Associated Families

Sequences