Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10007555 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14443 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (26.83%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010317 | Metagenome / Metatranscriptome | 305 | Y |
F026559 | Metagenome / Metatranscriptome | 197 | N |
F027823 | Metagenome / Metatranscriptome | 193 | Y |
F038204 | Metagenome / Metatranscriptome | 166 | N |
F038644 | Metagenome / Metatranscriptome | 165 | Y |
F041755 | Metagenome / Metatranscriptome | 159 | Y |
F090286 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1000755510 | F010317 | AGAAGG | MKKIYIEKLAEVSGGLPARSMEEHIMGKPNDNYSSIPIEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSTVTEVGDKYFKTRNSLYLYKFL |
Ga0214921_1000755511 | F038644 | N/A | MRTIKITQLPNGPWREYALEAQRRGIELVSDCSLSGTDITLIGAIDMIRELTEKIEKKTE |
Ga0214921_1000755512 | F027823 | N/A | MNITAAKDVPCVSQTNLWKGCFESHFMSGREIDAKYPILNTKWKYSHHKLLAGYDGYYYAYEKDIGTGIMFDPWLREFKVNMPIADDVYKSKMYYTTVESNLILLVLYKKKD |
Ga0214921_1000755513 | F041755 | N/A | MNITATKISGEEIHKKYPITNTKWKYSNRGYDWNGNNGYYYSNYKDWSTEIVTDPWRRNLINNGNPIKTNEERSMFSTTVEGNKVILVIYLNTYV |
Ga0214921_1000755522 | F038204 | N/A | MNKDIEFNGDDLVKSVESFASTLPTKIEYFEVGICDWGIILRREIDTNGKNYISHTDDSVTFTDSFTDIYDETQHHDVTHTRKFNVIRDELIASHKKKIEELQKEVDILEASDTFDKYNDIVYNK |
Ga0214921_1000755523 | F026559 | N/A | MTLFTTSNMKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDTCQVKKG |
Ga0214921_1000755534 | F090286 | N/A | MNILNIFKKKPSEPEASKIETLLPEQHYVKISLEVEYLLGKQLYIYNTNYTIKAENEQLFNESKEKQVKILNAIIKDIHEKLDDKSSDYVCVGEAMLLKKSDFINARIVYNYKKDK |
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