Scaffold Ga0214921_10007300

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007300
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14781
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003965	Metagenome / Metatranscriptome	459	Y
F006385	Metagenome / Metatranscriptome	374	Y
F009531	Metagenome / Metatranscriptome	316	Y
F017133	Metagenome / Metatranscriptome	242	Y
F034575	Metagenome / Metatranscriptome	174	N
F070104	Metagenome	123	N
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000730013	F000447	AGGCGG	MGYIEIFRLDEQGAGWVDLSDATPQELLDIEIGLFQEGAI
Ga0214921_1000730016	F006385	GGAG	MVLDTGTLIAIVIALAGSLTMMCLFWKQNIEQHKEIRRLQIALRATRTKSQKS
Ga0214921_1000730017	F002598	GAGG	MATKLYTIPDLLIGQNYRSRTRHFEGVIVSAQPAHPAIWYGENTEAYLVEINTRGLRNKFATVAVKVGE
Ga0214921_1000730021	F002515	AGGA	MKKTSEELRRLMELRRSNAASAVPSKKKYDRKKCQSQMLDLKKTKETPYEV
Ga0214921_1000730031	F009531	N/A	MTQQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTASDFKTAGEALNWVLDRHPDEMLELVVTSIPAYEKEYV
Ga0214921_1000730033	F070104	N/A	MLGYNETDIAVMTDAIEDAIKSGRLADEITDGLEKAQSFLDGLWAEGYFD
Ga0214921_1000730036	F034575	GGAGG	MNPTDLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEDESGEAMDSMARTEATGYLDALTEVYALTYAIAFAKEDVKNRREILGE
Ga0214921_100073004	F093845	AGGAG	MIKATLTSTSGTTKEMKFNTKEHLLEFIELYKATLHQGTAVCIDAPLVGIHSGWIQGTGTKK
Ga0214921_100073007	F003965	AGGA	MNSNVIIEVCKTHTPNKSAISNHGDDQFTFCEVCENNIERWYNDTDPERLPMWTDWKVSN
Ga0214921_100073008	F017133	GAG	MATVNNYPKGYMNLCPCGQVVKAPDLYHEGFTWWDNPNKCKELFEGVK