Scaffold Ga0214921_10007070

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007070
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15086
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F007163	Metagenome / Metatranscriptome	356	Y
F038992	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000707011	F007163	GGAG	MTIEDLEHIFQNQIEEGTEKLYFMLKDGDAMTVIERHPANDLAGLLPMLSSFEYAGGTANMPRFTK
Ga0214921_100070705	F038992	GAG	MNTIEQIINRIKRLEPFVVKVSVPEDFAFSGAVPFDMEIVGSTAMVTVWAVTEAEAQRRAEEYFQNTP
Ga0214921_100070709	F002869	GGAG	MTNEITAEMLDRKTAWCEQNAFWGRDSAIQRMQDFYYEKKRDSVDQDWPESFNVVDLAQVLNVERVSYRIYYSRDNLTCRLFVFRPHCTWAEEKKMLALGFVHAKDGDTENIPDQPVEQVEGVE