NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007066

Scaffold Ga0214921_10007066


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007066 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15092
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004793Metagenome / Metatranscriptome423Y
F029091Metagenome / Metatranscriptome189Y
F042308Metagenome / Metatranscriptome158Y
F102814Metagenome101N
F103142Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000706616F029091GAGGMAQKAVKKIGQYRLYKVEGYGIYEIYYGTKATGVHVENIANKENFEWAVEEIKRGVQQAVREGYGIGVSN
Ga0214921_1000706618F042308AGGCGGMGWDVTQVSSRITTKKFINWYLKSTYDGVYEPVKIFEGKNEYGQKAFYVALKKLEDNSIFATVFLTRRKNGSVAVKVLGESEGPCYYEAPESFINVLTPAKTLEGAWWRNRCLEKEVA
Ga0214921_100070662F102814GAGGMMAGTKPRDSQRQRLYDAQRLAGFYDTGEVMTIKEAQKFVNQVLSHQKTKKLHKQYAFWASVYPSKIIVEAGSGNHATMRHRDWELVRLIRLTKSGRNKFIILHEIAHHIVWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRVKVMTKTKKARVPRKREITSARLVA
Ga0214921_100070664F103142GAGGMALDYKGFKWGERISADQDSVDRFLHEGLVPQSPSVGDLQSAAEWIATYGSENAEEAQGWANVVAFLILTAESKEKRSVLAQAKKKFAEANGIPVSQVRINRNN
Ga0214921_100070668F004793GGAGGMNLIEAKKIVGNQPTWALKNMVKALQMLPWRNTAEDEQRLLAAKIVLKNRK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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