NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10007052

Scaffold Ga0214921_10007052


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10007052 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15111
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014710Metagenome / Metatranscriptome260Y
F036073Metagenome / Metatranscriptome170Y
F076813Metagenome / Metatranscriptome117Y
F088194Metagenome / Metatranscriptome109Y
F096706Metagenome104Y
F102437Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100070522F102437GGAGMTSKLRAFEDTVLSVREPRELKGSLICSIQDSDIPIIDKRKLIVAIDRCMTIKDIQRLFYNALLKFEGMGVL
Ga0214921_1000705233F096706N/AMYKLYSAVLAGKNTVNVFDVRKGIKTYSINLGSGIEVVNGPVVTQDKMTIVTKDSSGKTRGKVYSLPKGILSYSFQIS
Ga0214921_100070524F088194N/AMINEVAATSEETTAYALGTTIGTLLNLKRMVEQNMTDYSNNLEGMRGLHPMWSKSELMDQFDRAINKLNTITYPYKI
Ga0214921_100070525F036073AGGAGMSETIEQTKPYDADLHCKKIAWMVKNSPDWDYENQTLEQYLETVPDYPTDEQVAGFNHLYVEPFVPFKKEKPYEGEQVNEAS
Ga0214921_100070526F076813AGGAGMKHHNHFDQNGDIRDIFAAMAMLGLMQQSNPPVPKWVAAQAYKYADAMLEVREEVSHNEEIK
Ga0214921_100070528F014710GGAGMTQTINGIEYKVIPTQFKKKGFNYSQLKRDGMKAIYQQTRDDSSLNNYEVVKLGRHNGYLMGGVMIEPAETYPGSSLWGITAWTCCSIDEALKRYDALPS
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