Scaffold Ga0214921_10006972

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006972
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15230
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F004786	Metagenome / Metatranscriptome	423	Y
F013181	Metagenome	273	Y
F059951	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100069721	F004786	AGGA	MPTSTILSAVRGPLATALSTVSANVFSYVPENVPVPAVVLVPSSPYLEFDTIGSSTFRCKINFTISCCVTYSSNPASLDNI
Ga0214921_1000697210	F013181	AGGAGG	MSSLQFMNQDGEWESFPTDDVLYEKARQREMLAALQVRVICHLCNEPIPTTEIAVWRQGQAITWSCKKCHAVNESKP
Ga0214921_1000697217	F059951	N/A	MTAQDYAALAVAIVTVLGGVTAMLQFMMKHYLAELKPNSGSSIKDQVNRLEARVDTIIEMLRK
Ga0214921_1000697218	F000763	AGGAG	MKNPLVLAAGAFLAAWSATNFDLDYRAILFAILSGVFGYATPKK