Scaffold Ga0214921_10006894

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006894
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15332
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F020906	Metagenome	221	Y
F030434	Metagenome	185	N
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000689410	F020906	AGGA	MPTSAQITVGTTTTLLVAANIMDQTVWLHNLGSGVVYLGDANVTTANGYKMDNGDKMQVPVGDNEGLYAIAASGTHTIAILRQVN
Ga0214921_100068944	F090388	AGGA	MALLRLNCRVCAKIGLGMQTHKIVDEFINLPPNVVCVQCLGCGVMGIEMLLDSQVPTAEEILHD
Ga0214921_100068945	F030434	N/A	MAITDMSQIVQVILDRSQEKQAAACGFARSTGEFLTTPDRRYNRQTNYHEFILENSEAVGSEIAVAQYMGLQNFVPTVHTYRDEADITVGNLGFEVKWTRYINGHLIIHKDYPRLTDVAILVVNKSPVYQIVGWMPVLWAKKPKYYNAADGNFWVSQRELFEMDALRKSIYGITEA
Ga0214921_100068948	F003067	N/A	MTTAQSLLAIAIGLCTLIGFAAGLVRHLVKYYLAELRPDSNGGHNLRGRVDRIEAKVDSIYEILLSR