Scaffold Ga0214921_10006867

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006867
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15370
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (78.05%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003393	Metagenome / Metatranscriptome	489	Y
F003965	Metagenome / Metatranscriptome	459	Y
F010302	Metagenome / Metatranscriptome	305	N
F014849	Metagenome / Metatranscriptome	259	Y
F015434	Metagenome / Metatranscriptome	254	Y
F018352	Metagenome / Metatranscriptome	235	Y
F023275	Metagenome / Metatranscriptome	210	Y
F038086	Metagenome	166	N
F070856	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000686712	F000447	AGG	MGYIEIFRLDEQGAGWVDLSEATPAEILDLEIGLFQEGAL
Ga0214921_1000686713	F002598	AGAAGG	MATKLYTIQDLLIGKEYRSRNRHFEGEIISAEPRPEIWYGEKTEAYLIGIDYRGSIKTQYATVAVKVGE
Ga0214921_1000686716	F003965	AGGA	MNSNVIIQVCKSHVPNKSAISDVNDEQFTFCEVCENNIERWYNDTDPERLPMWTSWKVSK
Ga0214921_100068672	F003393	GAGG	MIDLENDDTIQIVDYVKVDILTAGQLMIDDCILINDEVVSIVDIVSLPDGYTLEVVNDFGESEIIEVGEYDQFDLMMLQ
Ga0214921_1000686721	F023275	N/A	MAILDNLEASMADDDGMPSKTVNDVIKEILEDPEHHKLMERLKYMEDHGI
Ga0214921_1000686722	F015434	GGAGG	MESESLDTHTPKGLNLVNETTKSTKCCDACECGNSEEEKFNKLMETQSSFEE
Ga0214921_1000686729	F010302	AGCAG	MVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTSSGVLFGTALILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVRTVNFTSGAGSTTIPISNIVTVSGSPLTASNFSVQFQIEGANPIASSMEIPVLVGAGTNLVINFDAVQYSGGTWSALTGSKTVHLFISIV
Ga0214921_1000686738	F070856	N/A	MAQYRNPDESPISPQPTAPATYNLGNIPPLVNWTVVIGDSASFRIYVEDDLGNELDYTNDESGDITGWDIKADFRRYSDNIGTDLIFSITPYATVFDDPGEFTVTISPEQSKQLRTGDVFDVQLTDANRVWTVCQGEMIMIGEVTDQS
Ga0214921_1000686739	F038086	GAG	MATTIISNISNPVSIQDIKPTKTLSNIKPFNSTASNVALGAVLAIATLTNTVAVSDLKPIPSNFQKVDYAKVITPTSVLPFRLTLTNIGIEGYNPANPPGIGIQIIGFSNYIL
Ga0214921_100068676	F018352	AGGA	MGKFKNTLMDILAHGDCYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHKLFNTKEN
Ga0214921_100068678	F014849	GAGG	MLTNLDLLAIIIALGGSMLVMFLFYKQNVAQQKEIRRLRNELRKALKV