Scaffold Ga0214921_10006833

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006833
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15416
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (83.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010619	Metagenome / Metatranscriptome	301	Y
F011151	Metagenome / Metatranscriptome	294	Y
F014135	Metagenome / Metatranscriptome	265	Y
F019602	Metagenome / Metatranscriptome	228	N
F022413	Metagenome / Metatranscriptome	214	N
F029748	Metagenome	187	N
F030431	Metagenome / Metatranscriptome	185	N
F043225	Metagenome / Metatranscriptome	156	Y
F043920	Metagenome / Metatranscriptome	155	N
F043921	Metagenome / Metatranscriptome	155	N
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000683312	F019602	GGA	MDDRDLIERYILEAWDKGLTGTDVINYVQYMSSVPVFEIEPVLQNLIARMSE
Ga0214921_1000683313	F100405	AGGA	MTKSVQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPAKVKAVKAPVVKAAKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDRAFAEAYIRT
Ga0214921_1000683315	F043225	AGGA	MNLDLINAELQDVALTQQQEEINLTYQDFLDTMNAYHDMMMYASHSYDEDAIFYGVN
Ga0214921_1000683317	F014135	GGAG	MSNGLTIDYDTADRITLLALKDQLKYLRKELEDFEDGKWLHPEDVTNNIKLIAALELLIPYYGGAV
Ga0214921_1000683321	F022413	AGGA	MLLAKPKLTNTLDAKQFETFAECQEYLEAYTDISMPLVEWIALGKILVAETMTPPEFYPKKVKGQIVMTKFDIEEFA
Ga0214921_1000683322	F011151	GGAG	MTGFKSKRQMAQDRFKVYCEWCHDWHYTDEVDILDVEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE
Ga0214921_1000683325	F030431	GAG	MSEIEIQINEILDTTVMLCEEIAEQVGCPVEWVEVIVEKRWNDLLFSDADFMNGYDMAKENM
Ga0214921_1000683326	F043920	GGAG	MRGSIRMLVGFLIVFGAVGTIEVNPDADLLVQMIVAVTGLAIMFTGVSAMRENAQ
Ga0214921_1000683330	F029748	GGA	MIKFLSGIAFGIFLATAGTSGIAMLIDSSVSKFQNTIKESVREQQPRQNNQQMKMESI
Ga0214921_1000683333	F043921	AGG	MKLFFIMGVLAVLTGCGTVGGAMEGAGQDLNKAGQYIKKVGN
Ga0214921_100068339	F010619	GGAG	MEDNIDFENSHPNMEQIVNAENLLPITKSVAKMLMRNPYLTLGKFFKKLSDENLQTLLEIIDEGDSEFNDGIEDIVLMTEMLSRAEGVPSQSIEDVTENVNYFGACVTCVSLARKGLVRVYYENMSFGTDLGDQVLVEKLD