Scaffold Ga0214921_10006750

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006750
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15545
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (82.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F002487	Metagenome / Metatranscriptome	554	Y
F003265	Metagenome / Metatranscriptome	496	Y
F060706	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000675010	F000166	N/A	MPNIPSTEDAQYFAQCVKKWQEILNLGDWRIEKGLKPAKQAMASVEFNESARLAIYRLGDFGSEQINEKTLSCTALHELLHVLLHDLLTVAQDPKSSQEDIDKQEHRVINLLERLLIKDFDGRT
Ga0214921_1000675018	F002487	N/A	MGRNARMERMIKLVTRENAIKDLSHGEYCCYCCEPKTSGSCCYENHFVPFQDLYEEDKEAMIEEYLKDN
Ga0214921_1000675035	F060706	GGAG	MSKLVRDDNGQLTQIYELGTTQVLTVTASSVQSNAFDAGCTIIRLATSSGAHCHFQIGSNPTASLTTSPMMPPNSVGYFKVNGGDKVAVIRGGTAVDISITQVV
Ga0214921_100067505	F003265	AGTAGG	VKRLIVLVAFFVFFVSAKAPCVISDFYSLTWLGNPSERHQRLLDWLTTNGDNCSSEQLVGIWNNLAAWVGTADSQELRGKVLYYYARAVEREKK