NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10006696

Scaffold Ga0214921_10006696


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10006696 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15619
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F039985Metagenome / Metatranscriptome162N
F056414Metagenome137Y
F067676Metagenome125Y
F079788Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000669614F067676N/AMRAHCGLKPNSRRKILTKAEALRIIKLLSALESWAFSQTDNRSLPDYLVEDIGNAMVLLERVILDKNT
Ga0214921_100066962F039985AGGAMLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDETLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNECDKAAGDNGGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADDGDEFDAPPAPTPVRKAAKLAPAPVMDDEEFF
Ga0214921_100066967F056414AGGAGMKLTEYQRSQLKAAAVFGGEQIDKVAASLQRENPEAFWRDNELSQRNFYHEPMSYGFILPHRSFVQRFIPRQYSAEQRQVMAQNHYLTYTNQIGVGA
Ga0214921_100066968F027776N/AMVARMMNPLEIEIKKTVFAHLPAVGDLGILSRGDLATVLHTACTEAALAGWARGAESVQRRVEEELTTLRQELKATQVELAYAKAN
Ga0214921_100066969F079788GGAGMDTDDEIESWASIAMGLIASVFFFIGLASVIVATCMAWGYYTYEPVCGSIAALFTQECK
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