Scaffold Ga0214921_10006508

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006508
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15959
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F007467	Metagenome / Metatranscriptome	350	Y
F010449	Metagenome / Metatranscriptome	303	N
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000650811	F002149	AGAAG	MTALKYIEESGVPESMWPNLAEWFGWFERQGMVGVVEDKDGIAGVALARCIKDGQKADHYVHSEDGENVFVDLTISSKGGKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0214921_1000650813	F000635	N/A	MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLKTSGTIPLRVVEKLKCLTRTNYIVDFPPSDSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214921_1000650817	F010449	GGGGG	MSEEQVWGMEIRLARMEERQLQLYAMVERSLAFHGDVANRLGALETLKTKVLAVAGVVGLACSMAWDVLKNRFAN
Ga0214921_100065084	F007467	AGG	LAGIPEPMNDKEAWDQFEDGLQDAKSYDEAVAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0214921_100065085	F030376	N/A	MAMLMASGMAEDDDGDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND
Ga0214921_100065088	F025460	AGGAG	MAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMALKEQPDVDFTFEKGGLKVKGKLKDLPTLSQDPAFAPYLAGIGSTISNEQSLQNEDIETQRAELNDRLKDLQKKRVKQEIEIAKGDRRTFAMEAGLGLIGAKPRADVLKDIEAEAGVYKNKLAELGFNRQAGQMETNVPDYQSSTMPLQAPTKVAPETPAQAPAQQEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ