Scaffold Ga0214921_10006204

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006204
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16491
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F029438	Metagenome	188	N
F037699	Metagenome / Metatranscriptome	167	Y
F045748	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000620415	F037699	AGGGGG	MNKKTLAIINSYARSAFVCLGTVYVTNPDGAFSDIWKAFLVAFLAPVLRALNPDETAFGIGSKE
Ga0214921_1000620417	F029438	AGGA	MAATRKRKKINRRVVRRSPEPLSKLDVFMITKHEIYKAAKKAGFSNEVAWFFMQEPHALPDWVSNDSPDALIPRIDPTEDEDE
Ga0214921_1000620423	F009887	AGGA	MGDLEMIDPSGLRATFTDRGIALDVVPLSECCEMCNDPRMMTIDGVRKCVSCECVNHIDFGHNA
Ga0214921_1000620424	F045748	AGG	MIHDLTWVFKCNKCAKPMLFHEKAGFDAGEEHVVVMCVKCENIGVKARIEAIADKAVTRCAKCGAWKLESSSCITCRKINALSV