Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10006111 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10006111 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16660
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (58.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16660

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (58.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F004475	Metagenome / Metatranscriptome	436	Y
F010599	Metagenome / Metatranscriptome	301	Y
F017788	Metagenome / Metatranscriptome	238	Y
F045545	Metagenome / Metatranscriptome	152	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000611111	F017788	AGGA	MKKIIITFLLIALSIPSASAQAAAKSLNTKGNKSSCKNIKANYKSEVIANWSNGLASDQDLLKEIDLNISMLTAKQKSTTGKIKTTIASWIKSEKNTKIAITDKNFEAINAAMNLKIVSVTNFDKLCKSIQK
Ga0214921_1000611116	F004475	GAGG	MTNWTEELNDKQKEEVWNFVVFTVKEIREQIAKDIEATIPLWKSKGFLKSRRTQKAFEASAAIARGQNEQIDG
Ga0214921_1000611128	F010599	GAG	MEMMFLIFFATLSFSFGLSYWATLDKLKKSNLLLAELFIKNRALEELNSQANSGINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVKGLDNYSNKLLALLPEMDQWKK
Ga0214921_1000611130	F045545	GAGG	MIKQITLFFICKIKSHDLVDAGSCPFTGKDYVACLRCGATITK
Ga0214921_1000611131	F003688	N/A	MYTDIMRRAVHSITPPKGFGVEIIDNEHFLTVKLDEKKFLHMVHDDKISALQYVVKLKKALEECGAIVLITREAIK
Ga0214921_100061118	F054581	AGG	MCPHCNNKLIPILYGFVDPKYVDMHKQGLVFLISTTYHTKNSPTSYCKKCEESFDIKLDYKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10006111

Overview

Ecosystem & Geography

Associated Families

Sequences