NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10006103

Scaffold Ga0214921_10006103


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10006103 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16677
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (66.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F033721Metagenome / Metatranscriptome176Y
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F066588Metagenome / Metatranscriptome126N
F081071Metagenome / Metatranscriptome114Y
F096882Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100061031F066588AGGAMKKALVTQAFGDKWHKVLELTKPRMESYCQRHKIDLITLEKPLVEPVQYSKLAIGNIIATKGYEHVTFLDCDVLVAEDCDDI
Ga0214921_1000610317F081071GAGGMTAVEYIELSGVPESKWPTFREWFAWHEKLDLVGVAKDGDKIAGVAIARCVNNGQDAKAYEHSENGDNVFVDLTVTNTDGISNALSRKALKCLLSILWDRFGPRRRITFKRSGVYKEYDYLKFMRKAMV
Ga0214921_1000610319F000635N/AVTLSEIAQFAGEKVGKTDSDTLNFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTVTLGTNVETPLSVSYDQSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPASTALDDELRLPHVHHVVLALTHADALERERQYAKAQSVVQAANADLAAMASYELSQVGGVKQITPVSLGDLMTEEITAA
Ga0214921_100061032F039993N/AMKIALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDLDDKGIIWKDVK
Ga0214921_100061034F033721AGGAMRWIKKELDEEGNPEWAVYIDKTGESNESEWSHFDTYKTRDDAVQACQRFTWEDYDCSDK
Ga0214921_100061035F039994AGGMVEEIQSARNEVVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTSQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0214921_100061039F096882N/AMANNQRSLRESIRAWRTFEDALKNMESFEACAKWVIDNPQICKKLSGAGLMAVMKEDIKKKA

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