Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10006103 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16677 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (66.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000635 | Metagenome / Metatranscriptome | 970 | Y |
F033721 | Metagenome / Metatranscriptome | 176 | Y |
F039993 | Metagenome / Metatranscriptome | 162 | Y |
F039994 | Metagenome | 162 | N |
F066588 | Metagenome / Metatranscriptome | 126 | N |
F081071 | Metagenome / Metatranscriptome | 114 | Y |
F096882 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214921_100061031 | F066588 | AGGA | MKKALVTQAFGDKWHKVLELTKPRMESYCQRHKIDLITLEKPLVEPVQYSKLAIGNIIATKGYEHVTFLDCDVLVAEDCDDI |
Ga0214921_1000610317 | F081071 | GAGG | MTAVEYIELSGVPESKWPTFREWFAWHEKLDLVGVAKDGDKIAGVAIARCVNNGQDAKAYEHSENGDNVFVDLTVTNTDGISNALSRKALKCLLSILWDRFGPRRRITFKRSGVYKEYDYLKFMRKAMV |
Ga0214921_1000610319 | F000635 | N/A | VTLSEIAQFAGEKVGKTDSDTLNFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTVTLGTNVETPLSVSYDQSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPASTALDDELRLPHVHHVVLALTHADALERERQYAKAQSVVQAANADLAAMASYELSQVGGVKQITPVSLGDLMTEEITAA |
Ga0214921_100061032 | F039993 | N/A | MKIALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDLDDKGIIWKDVK |
Ga0214921_100061034 | F033721 | AGGA | MRWIKKELDEEGNPEWAVYIDKTGESNESEWSHFDTYKTRDDAVQACQRFTWEDYDCSDK |
Ga0214921_100061035 | F039994 | AGG | MVEEIQSARNEVVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTSQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL |
Ga0214921_100061039 | F096882 | N/A | MANNQRSLRESIRAWRTFEDALKNMESFEACAKWVIDNPQICKKLSGAGLMAVMKEDIKKKA |
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