Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10006103 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10006103 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16677
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (66.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16677

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (66.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F033721	Metagenome / Metatranscriptome	176	Y
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F066588	Metagenome / Metatranscriptome	126	N
F081071	Metagenome / Metatranscriptome	114	Y
F096882	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100061031	F066588	AGGA	MKKALVTQAFGDKWHKVLELTKPRMESYCQRHKIDLITLEKPLVEPVQYSKLAIGNIIATKGYEHVTFLDCDVLVAEDCDDI
Ga0214921_1000610317	F081071	GAGG	MTAVEYIELSGVPESKWPTFREWFAWHEKLDLVGVAKDGDKIAGVAIARCVNNGQDAKAYEHSENGDNVFVDLTVTNTDGISNALSRKALKCLLSILWDRFGPRRRITFKRSGVYKEYDYLKFMRKAMV
Ga0214921_1000610319	F000635	N/A	VTLSEIAQFAGEKVGKTDSDTLNFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTVTLGTNVETPLSVSYDQSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPASTALDDELRLPHVHHVVLALTHADALERERQYAKAQSVVQAANADLAAMASYELSQVGGVKQITPVSLGDLMTEEITAA
Ga0214921_100061032	F039993	N/A	MKIALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDLDDKGIIWKDVK
Ga0214921_100061034	F033721	AGGA	MRWIKKELDEEGNPEWAVYIDKTGESNESEWSHFDTYKTRDDAVQACQRFTWEDYDCSDK
Ga0214921_100061035	F039994	AGG	MVEEIQSARNEVVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTSQQQIHLNHPNPDESGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0214921_100061039	F096882	N/A	MANNQRSLRESIRAWRTFEDALKNMESFEACAKWVIDNPQICKKLSGAGLMAVMKEDIKKKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10006103

Overview

Ecosystem & Geography

Associated Families

Sequences