NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10006037

Scaffold Ga0214921_10006037


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10006037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16803
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F039478Metagenome / Metatranscriptome163Y
F071967Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000603722F071967N/AVSNQSEALAICSEFAEEYGIDSKDNNKIIVYMKSEYINELKNMLENKNYKLKSFQVYGDEAIVYFIPKKKKNIQ
Ga0214921_1000603724F039478N/AMLKKILDFIDGVFEEEKEQPLLGTLYKIKGEALPFRYIRFTNELYSNKPVYHFKHHQLKEYKFNDLSKVERKANKEEVRIYNLIKDHINNIKI
Ga0214921_100060374F017268N/AVNLDIPLLFNLVLGALSFLGGWLFTRVFSLFDKQESLMKDINDKTFSDFITLRKEMELESRKHQQEISDLALKISTTYVTKESFEAYFDRIEAKLDRNFDIIQNHLNRK
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