Scaffold Ga0214921_10005920

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10005920
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17026
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052556	Metagenome / Metatranscriptome	142	N
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F067673	Metagenome	125	N
F079983	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000592011	F063632	N/A	MKTLIEFLGKFFQNNGHLRGALYFSIAALTPMAAAFVEWASQDGPKNWYEVIALAFGSLISGLTAVRAYLDTHLSNEKNSNE
Ga0214921_1000592012	F052556	N/A	MIKLELTPEEANGVLQLIDIAIKAGGIANAKVGLPIFDKIMEAAQATQPPELSLEK
Ga0214921_1000592017	F079983	N/A	MPATWDLPRSSGLWNQQDIANYNRLPIWMAMQQTKKMQMWSRWKDMFPKIKWKQNMGDILQGVIAENSPIVTQVHRPKNITELPLKTVASTWERTNQSRVKRHNFESPQFNFLPSFRDFRTKQLKFAAEDLSKQIAVGYDFFTRDNVFQNSPFIYIVGNTTAGELPLINAPAALPTDTSAVKDTAYIAAQAAKIGSDDNGFLSYRQIQAVASYAKNYLMIPPMDGMQNGAPADNEMSKGKYVLCGGSEIYEGLAFDTHVLNTKPLAMNLLNSSFQGAIGPNIIFREEFYPLRFAENGTMPAPEIELLLADSGYSTPNATRQTVINPAYASAAIGVAFLIGYNAYEQIDVGPPPSEFTGAAINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLISDTVLGIIGNTSRNIIPILYRRQIAPSLFV
Ga0214921_100059202	F067673	N/A	MNSLIQQVSETVGVLPDSQDKESQVLGWLNRAAVMIYDQYDLPGSVFEQFFCVDNNQHVVTFPWYVGAIRGVRWHDSSRLITLTDMRPRYHGVPWTQPYLKWRQIQSTPLHTPLTNAGPLTFQINAAETQPFDVIVNGQTSRAANVTEILTFNVGDTVKSTVNLFEPESPFGITSIKKSRYTNSDVIILNSATQGEIGRIPNNQLYASNLRVQILDYNASTPFIIGEDCVEVLFKQRFSPFVNIDSIWTDERLIQALVYAVKYIYAMEKEKMDVASASKDMFETICKKVCENLESGTELMIQAERHATQDAAIMFPTWPLVQGGVRNLW
Ga0214921_100059209	F065720	AGGA	MSFLSDLVMKLLRWFYELSQKDSVSQDAQKDDKLKQNLLARIDARERELLVESNLRAKRAASALSRIDKSPRVGFRFKRPQGKITKQDNNS