Scaffold Ga0214921_10005491

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10005491
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17917
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022410	Metagenome / Metatranscriptome	214	Y
F034468	Metagenome	174	Y
F044320	Metagenome / Metatranscriptome	154	N
F045091	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000549117	F022410	GGAG	MIKYTVEWHDKMHRWDVVRWDTTVEGARVGTTVDRCATIEDAQEICNYHTDMMNPELWADVGCEFDGEIA
Ga0214921_1000549118	F034468	AGG	MSTEPFYLTYELVVEFLQMHPAECVFELDAPTKIFTRLMEAGFYTATDAVSRSKEFRECWTLSEIYCPHEGIDRRAELGITTLDWETA
Ga0214921_100054912	F044320	AGGAG	MSKGTRPRPSVVSQEELAARHEAIFGRKPPKERYVPPPLPADLAGPGSFERQLGTTKLPPGRT
Ga0214921_1000549125	F045091	GAG	MLNKFAITTELIHHYPDAPDVDEAMRSWWQNIRDDGGLRLTYEGYRVFSDCLELNSYTFELPEKLLTPRNLIALDRHMASPYYMVNNRKLNKLVMFGSREAMMATLHGDMQRFISSLTY