Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10005332 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10005332 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18211
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (52.17%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18211

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (52.17%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000533210	F002149	GAGG	MTAVEYIEQSGVPEAMWPNLEAWYGWFEKQGMVGVVKDGDEIAGVALARCIKDGQKADHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLWERFGPRKRITFNRFGKPRSYDYMTFMRKARV
Ga0214921_1000533212	F000635	GGA	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVAYNDAEVDPVDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGVAELDLYPRLATSGTIPLRVIEKLKCITRSNYIVDFPPSDDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0214921_1000533215	F010449	AGG	MEVRLARMEERQVQLCAMVERSLAFHGDVANRLGALETLKTKVLAVAGVVGLACSMAWDVLKNRFN
Ga0214921_1000533219	F012569	N/A	MSRALDKFQGQYGFSVGTVGTATPGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG
Ga0214921_1000533220	F010603	AGGAG	MANEFVRSTRKAKNKALRFDAQGFTNVFEVTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10005332

Overview

Ecosystem & Geography

Associated Families

Sequences