Scaffold Ga0214921_10005043

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10005043
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18931
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (58.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F043823	Metagenome	155	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000504323	F006891	GAG	MSTDQVAELAERLSLVRESIARIETRQGVIMDMLERSQASLGEYHGRLTSMERDAHTIRTRLWLVALVSGAVVSTAWELIKRRLGF
Ga0214921_1000504325	F031026	GAGG	MRGGLNALLLISALALCSCATTQTQDGPPPSPDSISYFIYAWDKAERTNPPCPQAYRDLFAESLKALSDSLAETQRERARQ
Ga0214921_1000504329	F048834	AGGAGG	VAIPSVKDWAVALDAYVAGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKISQRGGKIGYCRRVPHYRLTPVKAGKT
Ga0214921_1000504330	F043823	N/A	MKKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELEKQKKR
Ga0214921_1000504331	F026867	GAG	MSLGRLNDIAMKLRQQDQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDQWRLMQTGLNLPRPADRLRSAVGKARELASRSDSRVSWRQIANTLKAEAWLHELREGNGSSD