NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004991

Scaffold Ga0214921_10004991


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004991 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19067
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (59.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011151Metagenome / Metatranscriptome294Y
F015470Metagenome254N
F054849Metagenome139N
F058128Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000499134F015470N/AMATKKVTPKTTPVTKKTPVKKAPVKRIVKRVAPVTPTFVNPAKTPSSMVDKAIDLIKWVDTPFKLFEVILLASLFFFGYFAWDSRVVILEAITHSNKVTNLKETNLLVPVAISLQKDLDAVTVVVHKASLVVNSRTTLLALSSKGTRDNTLDGLNSSLFNKDPIRNAAIIAMLNGEVYCDKLENTGKSSEWEIKQGATFICRGGVPPEIGDFDGYISVGFKTEPTDLPSVKTRINLASSEMSR
Ga0214921_1000499135F054849N/AMKWIIAFTLSFLSISSLSQQCDDCIGGVVATDTRTCLVSNFHNIAYSIHDPGLRHQQLSLWLTTNGDKCDSKQLVLIWNRLAEWGGASDSSELRGKLLYYFSRAEERERKVKS
Ga0214921_1000499136F058128N/AMDGITWFPIVQPSYANVDGILADVHAKKNEEKWEEYNKQLIQKIHLRDYLYDLYSKRTHENQIRMEIYNVSTIDFFV
Ga0214921_100049918F011151GAGMTKSKFKVYCEWCQDWHYTDEVEFLNIEEDIQGRDVMHFECGKPPSWNEDISRYDGTSSLVYRE

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