Scaffold Ga0214921_10004943

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10004943
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19177
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F016812	Metagenome	244	Y
F027179	Metagenome	195	Y
F034183	Metagenome	175	Y
F043402	Metagenome	156	Y
F054036	Metagenome	140	Y
F101144	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000494319	F101144	N/A	MEAKTFTYYNTERHGYVETTRAYLRKLKISKLISPYSRQSGRKVYIEEDGDLSLFCKRHTVAGISIVLKEAEKEQRFFDNMWNYKDDECQDEQFDGFKSEWSLSQRVHFSKPDSIKHVRNNTFETKDKKCLKIVPTFYLDGKPLNEASMKKLGIELTNITCGELDYEYEL
Ga0214921_1000494320	F009266	AGGA	MTNKERKILDKEIQYLCEYQDRVQAIRKYTGINPHYTFLKEVETIESLYKWVLENRKQEKSTYFSVGTSGWYVVYLRDKKTYKKGEKFRIKIFHTFVWTDNLE
Ga0214921_1000494321	F002398	AGGA	MIPLISIFLLTSLDPIKNFVSLKTYISENAKVHCKVYFINEDIPDYPRVNVIEKNKFDFFAYLDTIGVEHSQVGSYYFFYRKPK
Ga0214921_1000494323	F027179	N/A	MADGLFLYEKENSYVVMDQQDNILKECKTSTSCARYILKTLQSRRAAERQAIEEINKSKV
Ga0214921_1000494324	F002406	N/A	MENLKWIRAMADRLRDELSSDYDDETKDLIIRAFMQGLFQQPGIVEELKSSSLIESDYFEDNDETDIHG
Ga0214921_1000494327	F054036	AGGAG	MKLDFKVTGTISVPEDAIKHYDVAGKLYALEFNNKMYMLQLCLVAESSDGEYEMIHQYDEMLLNDIIDLRYDEAEFVEG
Ga0214921_1000494329	F016812	GGA	MNTLNPELIKEEDEAAFSTNLFKLYKLDERCGKLEAPNFRVIYLKDKKTQVHISNHFNSPTCIISYYNIEDKSCVDARMISKTLYNKIYVHYFEVKKNHY
Ga0214921_1000494330	F034183	AGG	MNKLKNLAANLNDEEAALIFQLLLNAFETANLQKVQYENEDLPDESSLMVNVELNTRNVPAVVIEKLLDLLK
Ga0214921_1000494331	F043402	GGA	MVEKFEQLVDSLSEKESDNIITLLTLLLESWEDGKINLYSEIQDFELTTIYKVLNLFHEQTEEPSSES