NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10004879

Scaffold Ga0214921_10004879


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10004879 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19366
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020690Metagenome / Metatranscriptome222N
F022415Metagenome / Metatranscriptome214Y
F050153Metagenome / Metatranscriptome145Y
F052598Metagenome142N
F058151Metagenome / Metatranscriptome135Y
F072350Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000487913F022415GGAGMSRMSELHMIIVDAIACDLSEDLIIDLMVEEGLPREACPEILRVFKQEESV
Ga0214921_1000487922F052598GAGMIPTFKITVTDEFHQNFVYETNDKEDILDRVALWLSNLDDTPIYDIHIEVNP
Ga0214921_1000487923F058151GAGMWRKREIMELQNKASISALVDEVPTDTSGKWVNKEDLYPFASAVADYVLTRVEKSLDDSN
Ga0214921_1000487928F072350AGGAGMQDYFKAKFTWDYDDKRMRYDVTEWGTPINGTRIGKVVFHSNVKEECIAMAEEYNYNNECEEWVLFNNQECEFDV
Ga0214921_100048793F020690AGGAGMIKSTDKLVTKGVYMSLSAIYTHTKTAKVIALMIQRSLPEFRKQLNLPRDVKFRIAPIKAKNTNGYYEVENNMATIDCRLGWAKALEVIAHELVHAEQYHTGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCRILEEKYK
Ga0214921_1000487930F050153AGGAMSDGGKGSKSRPLGVEYDKYSSNWDTIFRKSPKEIDDAVIEDEAFKIIEERNKNVISDQKPD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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